A Sequence Distance Graph framework for genome assembly and analysis [version 1; peer review: 2 approved]
The Headset Sequence Distance Graph (SDG) framework works with genome assembly graphs and raw data from paired, linked and long reads.It includes a simple deBruijn graph module, and can import graphs using the graphical fragment assembly (GFA) format.It also maps raw reads onto graphs, and provides a Python application programming interface (API) t